add telomere positions to a CN df

See import_telos_file() but really just a convenience function. Telomere positions in the UCSC gap file are all just 10Kb, except chr17, which I set to 3Kb and 5Kb, again see linked function for details.

Usage

add_telomere_positions(cn_df, version = c("hg19", "hg38"))

Arguments

cn_df

dataframe of CN information, segments or read bins. Just needs a 'chr' column.

version

string. hg19 (default) or hg38, not that it makes a difference.

Value

input dataframe with new columns of telomere information