convenience function to extracting breakpoints per chromosome arm

just calling the generic extract_breakpoints, with some pre-loaded options. See that function for details.

Usage

extract_bp_per_arm(
  segs_df,
  sample_col = "cell_id",
  chrom_col = "chr",
  genome_version = c("hg19", "hg38"),
  return = c("values", "counts")
)

Value

dataframe. Sample IDs and the observed breakpoint counts on chromosome arms.