visualize GC correction for a cell

Seeing how GC correction worked for a cell can give an indication if the multiplier chosen by HMMCopy was appropriate to form integer copy numbers. Also can just be informative to see what's going on behind the float copy number to integer CN value.

Usage

gc_plot(reads_df, cellid, plot_choice = c("both", "raw", "corrected"))

Arguments

reads_df

dataframe of reads like information.

cellid

string of cell to plot

plot_choice

string of plots to show. Default is both, alternatively " 'raw' for just the raw GC values or 'corrected' for just the corrected values.

Value

ggplot2 object