add centromere information to reads by chromosome — add_centromere_locations • dlptools

See dlptools::read_and_prep_ucsg_cenrtomeres() for details of file origins.

Usage

add_centromere_locations(
  cn_df,
  centro_file = NULL,
  version = c("hg19", "hg38")
)

Arguments

cn_df: dataframe of cn states for read bins or segments
centro_file: NULL or string to the path if you download yourself
hg19: boolean to target hg19 for loading
hg38: boolean to target hg38 for loading

Value

input table with centromere information added by chromosome