make a plot of just the foreground events — plot_heatmap_of_tip_changes • dlptools

Colors highlight the change in state between the tip and parent node.

Usage

plot_heatmap_of_tip_changes(
  states_df,
  phylogeny,
  file_name,
  changes_col = "fg_change"
)

Arguments

states_df: bin based dataframe of state changes. Typically the output of characterize_foreground_total_state_changes() or from medicc_profiles_to_foreground(). But really, any bin dataframe with a column indicating change between tip and parent will work.
phylogeny: phylo object of the tree being used for analysis.
file_name: what to call the resulting plot png.
fg_change: the column to plot with the changes between parent and tips.